Field Insights

Scout Soybean Diseases: Quick Identification Guide

Get tips to identify and treat the most common soybean disease threats.
Scout Soybean Diseases: Quick Identification Guide
June 2025 | BY BY SYNGENTA THRIVE 3 Min Read
Know what you’re looking for when scouting soybean fields! This ID guide helps you identify the most common soybean disease threats — and gives tips on how to treat them.
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BROWN SPOT


Caused by: Septoria glycines


Thrives in: Warm, humid conditions


Infects: As early as first true leaves


Looks like: Light to dark brown lesions on lower leaves with possible yellowing; more irregular as they expand


Results in: Damage to leaf tissue, defoliation, reduced yield


Pro tip: An in-season application of Miravis® Neo fungicide helps protect the lower canopy from early defoliation and keeps plants greener longer.

CERCOSPORA LEAF BLIGHT


Caused by: Cercospora kukuchii


Thrives in: Warm, moist conditions, mostly in Southern geographies


Infects at: Seed set


Looks like: Light purple pinpoint spots on upper leaf surface that expand to irregular patches; leaves become leathery and purple


Results in: Damage to leaf tissue, reduced seed quality (purple stain), reduced yield


Pro tip:  Combine crop rotation, tillage, and Miravis Neo fungicide to help protect plant health and support a stronger finish at harvest.

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FROGEYE LEAF SPOT


Caused by: Cercospora sojina


Thrives in: Warm, humid environments


Infects: Severity increases as plants mature at R3-R5


Looks like: Small, dark, water-soaked circular lesions with gray-brown border on young leaves


Results in: Damage to leaf tissue, reduced yield


Pro tip: By the time you see frogeye leaf spot, it's already spreading. Apply Miravis Top or Miravis Neo fungicide at R3 to protect green tissue during pod fill.

POWDERY MILDEW


Caused by: Microsphaera diffusa


Thrives in: 60–70°F, damp conditions


Infects in: May to July


Looks like: Raised, fluffy or powdery white spots on lower leaves


Results in: Damage to leaf tissue, reduced yield


Pro tip:  A timely application of Miravis Neo fungicide helps stop powdery mildew from creeping up the canopy and cutting into pod fill.

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RED CROWN ROT


Caused by: Calonectria ilicicola


Thrives in: 77–86°F, wet conditions


Infects: At planting/early-season (soilborne)


Looks like: Brick red mushroom-like structures at base of plant; yellow speckled spots on leaves (similar to SDS)


Results in: Poor stands; root damage; reduced water and nutrient uptake, leaf tissue damage, reduced yield


Pro tip: Red crown rot is an emerging threat that’s still on the move! Start strong with Saltro® seed treatment* to protect your soybean roots early and suppress infection before it threatens yield potential.

SUDDEN DEATH SYNDROME (SDS)


Caused by: Fusarium virguliforme, often in fields with active soybean cyst nematode
Thrives in: Cool, wet conditions


Infects: At planting/early-season (soilborne); visible symptoms appear in August


Looks like: Yellow-brown flecks on leaves (similar to brown stem rot); blue mold present on taproot


Results in: Damage to leaf tissue, reduced water and nutrient uptake, reduced yield


Pro tip: Protect roots early with Saltro seed treatment, which delivered an average yield boost of 3.1 bu/A1 over ILEVO® in trials under SDS pressure.

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TARGET SPOT


Caused by: Corynespora cassiicola


Thrives in: Warm, wet conditions


Infects at: Canopy to R6, beginning with the lower leaves


Looks like: Round to irregular dark brown spots on lower leaves with yellow halos that resemble targets


Results in: Damage to leaf tissue, heavy defoliation, reduced yield


Pro tip:  Target spot thrives when humidity runs high and the canopy becomes dense. Apply Miravis Top fungicide at R3 to stay ahead of leaf damage and hold onto yield.

WHITE MOLD


Caused by: Sclerotinia sclerotiorum


Thrives in: Cool temps, wet soil, high humidity


Infects: At flowering; can survive in soil for 6–10 years


Looks like: Fluffy white substance; trumpet-shaped, mushroom-like structures in soil at plant base


Results in: Damage to plant tissue, reduced yield potential


Pro tip: When flowering starts under cool, wet conditions, white mold risk goes up fast. Apply Miravis Neo fungicide at R1-R2 to protect your canopy and help suppress white mold before it sets in.

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PHYTOPHTHORA ROOT ROT


Caused by: Phytophthora sojae


Thrives in: Warm, wet conditions and poorly drained soils


Infects: At planting and early-season


Looks like: Brown stem lesions near the soil line; plants wilt and collapse


Results in: Root damage, stand loss, reduced water uptake, yield decline


Pro tip: Protect roots and boost emergence with CruiserMaxx® APX seed treatment, containing two strong modes of action against Phytophthora, delivering a 2 to 5 bu/A advantage over untreated seed in Ohio State trials2.

1 Syngenta US trials with SDS pressure (n = 48), conducted from 2015–2023 in AR, IL, IA, KS, KY, MI, MN, MO, TN, and WI.  


2 2018 Ohio State University Phytophthora trial; α = 0.05


*Syngenta supports a FIFRA Section 2(ee) recommendation for Saltro for suppression of Red Crown Rot in Arkansas, Illinois, Indiana, Iowa, Kentucky, Missouri, Ohio and Tennessee. Please see the Section 2(ee) recommendation to confirm that the recommendation is applicable in your state. The Section 2(ee) recommendation for Saltro should be in the possession of the user at the time of application.